Funny, I just looked at this code today as I was trying to use Window.executeJavaScript() and it wasn’t working.
It appeared that I had a silly mistake in my JS and got no feedback on it (no error in the Firefox console, not sure why).
Do you use Window.executeJavaScript() in your program?
The only way I can see that happening is if you have a background thread that does something to the jsExecQueue while the component is being painted - you are probably calling Window.executeJavaScript() from a background thread without synchronizing that call to the application instance.