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cytoscape-addon

Cytoscape for Vaadin Flow / Graph / Network

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Rating

Popularity

100+

Cytoscape Addon for Vaadin 14+ (based on npm)

This Vaadin addon wrappes https://js.cytoscape.org/ in a java component. It does not cover all features, but most of them an showcases how you can extent it on your own.

This addon uses currently to cytoscape extensions:

Links

Running the demo application

Using jetty:run or by running the de.xinblue.cytoscape.View class (in src/text/java) directly from your IDE.

Examples

public class View extends Div {
    
    
    private VerticalLayout dashboard=new VerticalLayout();
    private HorizontalLayout hl1=new HorizontalLayout();
    private Label output=new Label();
    private Label rawOutput=new Label();
    private VerticalLayout buttonLayout=new VerticalLayout();
    private VerticalLayout nodeList=new VerticalLayout();
    
    private void createDashboard() {
            H1 headline=new H1("Cytoscape Vaadin Addon");
            dashboard.add(headline);
            Label headlineLabel=new Label("Use the mousewheel to zoom. Drag icons on the canvas to add nodes. Tap (left mosue down) on a node/edge to access the context menu. Click on the edge handle (blue dot on mouse over) to draw edges between nodes.");
            dashboard.add(headlineLabel);

            hl1.setWidth("100%");
            dashboard.add(hl1);
            dashboard.add(output);
            dashboard.add(rawOutput);
            
            add(dashboard);

    }
    
    private void setOutput(String s) {
        output.setText(s);
    }
    
    private void setRawOutput(String s) {
        rawOutput.setText(s);
    }
    
    private void processContextMenu(Cytoscape cy,String s) {
        
        ObjectMapper mapper = new ObjectMapper();
        JsonNode actualObj;
        try {
            actualObj = mapper.readTree(s);
            if (actualObj.get("action").asText().equalsIgnoreCase("editnode") ) {
                setOutput("Contextmenu Edit Node");
            } else if (actualObj.get("action").asText().equalsIgnoreCase("deletenode") ) {
                setOutput("Contextmenu Delete Node");
                cy.deleteNode(actualObj.get("id").asText());
            } else if (actualObj.get("action").asText().equalsIgnoreCase("showedge") ) {
                setOutput("Contextmenu Edit Edge");
            }
        } catch (Exception e1) {
            e1.printStackTrace();
        } 
    }
    
    
    private void createButtonLayout(Cytoscape cy) {
            
            
            Button b1=new Button("Load graph");
            b1.addClickListener( e -> {cy.loadGraph(cy.getDemoGraph2());});
            buttonLayout.add(b1);
            
            Button b2=new Button("Export graph");
            b2.addClickListener( e -> {cy.exportGraph().then(e2 -> {setOutput("Export Graph");setRawOutput(e2.toJson());});});
            buttonLayout.add(b2);
            
            Button b3=new Button("Center graph");
            b3.addClickListener( e -> {cy.centerGraph();});
            buttonLayout.add(b3);
            
            Button b4=new Button("Get selected elements");
            b4.addClickListener( e -> {cy.getSelectedElements().then(e2 -> {setOutput("Export Graph");setRawOutput(e2.toJson());});});
            buttonLayout.add(b4);
            
            Button b5=new Button("Add predefined nodes and edges dynamically");
            b5.addClickListener( e -> {
            	
            	Node node1=new Node();
                node1.getPosition().put("x", 100);
                node1.getPosition().put("y", 100);	
                node1.getData().put("id", "x1");
                node1.getData().put("myname", "martin");

            	Node node2=new Node();
                node2.getPosition().put("x", 200);
                node2.getPosition().put("y", 200);	
                node2.getData().put("id", "x2");

                Edge edge1=new Edge();
                edge1.getData().put("id", "x1-x2");
                edge1.getData().put("source", "x1");
                edge1.getData().put("target", "x2");

                cy.addNode(node1).then(e1 -> cy.addNode(node2).then(e3 -> cy.addEdge(edge1)));
            });
            buttonLayout.add(b5);
            
            Button b6=new Button("Clear all");
            b6.addClickListener( e -> {cy.deleteAll();});
            buttonLayout.add(b6);
                
            
            Button b7=new Button("Delete selected nodes");
            b7.addClickListener( e -> {
            	cy.getSelectedElements().then(e2 -> {
            		
                    setOutput("Delete selected");setRawOutput(e2.toJson());
            		String s=e2.toJson();
            		try {
                        JsonNode selectedObject = new ObjectMapper().readTree(s);
                        Iterator<JsonNode> iterator = selectedObject.iterator();
                    
                        System.out.println("delete selected");
                        while (iterator.hasNext()) {
                            JsonNode js=iterator.next().at("/data/id");
                            String id=js.asText();
                            cy.deleteNode(id);
                        }
                    } catch (Exception e1) {
                        e1.printStackTrace();
                    }
            	});
            });
            buttonLayout.add(b7);

            Button b8=new Button("Set element data");
            b8.addClickListener( e -> {cy.getSelectedElements().then(e2 -> {
                	String s=e2.toJson();
            		try {
                        JsonNode selectedObject = new ObjectMapper().readTree(s);
                        Iterator<JsonNode> iterator = selectedObject.iterator();
                        while (iterator.hasNext()) {
                            JsonNode js=iterator.next().at("/data/id");
                            String id=js.asText();
                            setOutput("Set data of element with id:");setRawOutput(id);
                            cy.setElementData(id,"{\"myname\":\"martin\"}");
                        }
                    } catch (Exception e1) {
                        e1.printStackTrace();
                    }	
            	});
            });
            buttonLayout.add(b8);

    }
    
    private void createNodeList(Cytoscape cy) {
        
        nodeList.setWidth("200px");
        Icon logo1 = new Icon(VaadinIcon.CIRCLE);
        logo1.setSize("100px");
        logo1.setColor("orange");
        
        Icon logo2 = new Icon(VaadinIcon.ELASTIC);
        logo2.setSize("100px");
        logo2.setColor("orange");
        
        nodeList.add(logo1);
        nodeList.add(logo2);
        
        //Make icons draggable
        DragSource<Icon> box1DragSource = DragSource.create(logo1);
        box1DragSource.setDragData("MyNode1");
        
        DragSource<Icon> box2DragSource = DragSource.create(logo2);
        box2DragSource.setDragData("MyNode2");
        
        box1DragSource.addDragStartListener( e -> cy.setDragObject("Node1"));
        box2DragSource.addDragStartListener( e -> cy.setDragObject("Node2"));
        
    }
    
    
    private void createDashBoardContent() {
        //Create Cytoscape Canvas
        Cytoscape cy=new Cytoscape();
        cy.setWidth("100%");
        cy.setHeight("600px");   
        cy.addClassName("cy");

        //Add edge handling
        cy.registerStandardEdgeHandling();

        //Create context menu for nodes and edges. Tap on an edge or node (left mouse down for 1 second)
        cy.createContextMenu("node",new String[]{"DeleteNode","EditNode"});
        cy.createContextMenu("edge",new String[]{"ShowEdge"});
        
        cy.addActionListener(e -> {
        	setRawOutput("ActionEvent: "+e.getMessage());
        	processContextMenu(cy,e.getMessage());
        	
        });
     
        cy.registerEvent("mouseover", "node");
        cy.addCustomEventListener(e -> {
            try {
                JsonNode event = new ObjectMapper().readTree(e.getMessage());
                setOutput("CustomEvent:");
                setRawOutput(e.getMessage());
                JsonNode ja=event.get("data");
                Iterator<JsonNode> iterator = ja.iterator();
                while (iterator.hasNext()) {
                    JsonNode js=iterator.next().at("/data/id");
                    String id=js.asText();
                }
            } catch (Exception ex) {
                ex.printStackTrace();
            }
        });
    
        cy.addNodeHasBeenAddedEventListener(e -> {
        	setOutput("NodeHasBeenAdded Event");
        	setRawOutput(e.getMessage());
        });
        
        cy.addEdgeHasBeenAddedEventListener(e -> {
        	setOutput("EdgeHasBeenAdded Event");
        	setRawOutput(e.getMessage());
        });
        
        cy.addEdgeAddedEventListener(e -> {
        	setOutput("EdgeAdded Event");
        	setRawOutput(e.getMessage());
        });
        
        
        cy.addDragListener(e -> {
            try {
                JsonNode dragObject = new ObjectMapper().readTree(e.getMessage());
                Node node=new Node();
                node.getPosition().put("x", dragObject.get("dragXCoordinate").asInt());
                node.getPosition().put("y", dragObject.get("dragYCoordinate").asInt());	
                node.getData().put("type", dragObject.get("dragObject").asText());
                cy.addNode(node);
            	setOutput("Drag Event");
            	setRawOutput(e.getMessage());
        
            } catch (Exception ex) {
                ex.printStackTrace();
            }
        });
        
        DropTarget<Div> dropTarget = DropTarget.create(cy);
           
        dropTarget.addDropListener(event -> {
            event.getDragData().ifPresent(data -> {
            	setOutput("Drag target");
            });
        }); 
    

        //Define an array of styles for different selectors	
        GraphStyles gs=new GraphStyles();
        
        //Define the style for nodes
        GeneralGraphStyles node=new GeneralGraphStyles.Builder().background_color("#c00").label("data(id)").build();
        gs.addStyle("node", node);
        
        //Define the style for edges
        GeneralGraphStyles edge=new GeneralGraphStyles.Builder().width("2").line_color("#00c").line_style("dotted").build();
        gs.addStyle("edge", edge);
        
        //Define the style for selected nodes
        GeneralGraphStyles node_selected=new GeneralGraphStyles.Builder().background_color("#0c0").build();
        gs.addStyle("node:selected", node_selected);
        
        //Define the style for edgeHandling
        GeneralGraphStyles eh_handle=new GeneralGraphStyles.Builder().background_color("#00C").width("8").height("8").text_opacity("0").build();
        gs.addStyle(".eh-handle", eh_handle);
        
        //Set the styles
        cy.loadStyle(gs.getJson(true));
    
        //Load demo graph
        cy.loadGraph(cy.getDemoGraph2());
        
        createButtonLayout(cy);
        createNodeList(cy);
        hl1.add(buttonLayout,nodeList,cy);
    }
    
    public View() {
        
        createDashboard();
        createDashBoardContent();
         
    }
    
  
}

Compatibility

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Version

Released
2023-03-07
Maturity
BETA
License
MIT License

Compatibility

Framework
Vaadin 14+
Browser
Firefox
Safari
Google Chrome
Microsoft Edge

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